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Htsjdk

Documentation & Getting Help. API documentation for all versions of HTSJDK since are available through chicacheeks.com If you believe you have found a bug . htsjdk can now read and write bam files with long CIGAR strings. This allows very long reads that have complicated alignments to be represented in bam. HTSJDK is an implementation of a unified Java library for accessing common file formats, such as SAM and VCF, used for high-throughput sequencing data.

chicacheeks.com · chicacheeks.comng · chicacheeks.comls. chicacheeks.comn · chicacheeks.com HomePage, chicacheeks.com Date, (Feb 23, ). Files, pom (2 KB) jar ( MB) View All. Repositories, CentralSonatype Releases. Used By, 55 . I just got this while running Picard's Mark duplicates. Thanks!.

26 Dec I ask because I'm having some interoperability issues between bcftools and HTSJDK if I want to use bcf files (which I do, because they parse so. @jamesnemesh The work on VCF/BCF has been started, and we plan to spend more time in the upcoming quarter. But since we need to deal with. Source Package: htsjdk (+dfsg) [universe] sequencing data (HTS) formats; libhtsjdk-java-doc: Documentation for the java HTSJDK library.

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